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dc.contributor.authorFreschi, Luca
dc.contributor.authorJeukens, Julie
dc.contributor.authorKukavica-Ibrulj, Irene
dc.contributor.authorBoyle, Brian
dc.contributor.authorDupont, Marie-Josee
dc.contributor.authorLaroche, Jerome
dc.contributor.authorLarose, Stephane
dc.contributor.authorMaaroufi, Halim
dc.contributor.authorFothergill, Joanne L
dc.contributor.authorMoore, Matthew
dc.contributor.authorWinsor, Geoffrey L
dc.contributor.authorAaron, Shawn D
dc.contributor.authorBarbeau, Jean
dc.contributor.authorBell, Scott C
dc.contributor.authorBurns, Jane L
dc.contributor.authorCamara, Miguel
dc.contributor.authorCantin, Andre
dc.contributor.authorCharette, Steve J
dc.contributor.authorDewar, Ken
dc.contributor.authorDeziel, Eric
dc.contributor.authorGrimwood, Keith
dc.contributor.authorHancock, Robert EW
dc.contributor.authorHarrison, Joe J
dc.contributor.authorHeebs, Stephan
dc.contributor.authorJelsbak, Lars
dc.contributor.authorJia, Baofeng
dc.contributor.authorKenna, Dervla T
dc.contributor.authorKidd, Timothy J
dc.contributor.authorKlockgether, Jens
dc.contributor.authorLam, Joseph S
dc.contributor.authorLamont, Iain L
dc.contributor.authorLewenza, Shawn
dc.contributor.authorLoman, Nick
dc.contributor.authorMalouin, Francois
dc.contributor.authorManos, Jim
dc.contributor.authorMcArthur, Andrew G
dc.contributor.authorMcKeown, Josie
dc.contributor.authorMilot, Julie
dc.contributor.authorNaghra, Hardeep
dc.contributor.authorNguyen, Dao
dc.contributor.authorPereira, Sheldon K
dc.contributor.authorPerron, Gabriel G
dc.contributor.authorPirnay, Jean-Paul
dc.contributor.authorRainey, Paul B
dc.contributor.authorRousseau, Simon
dc.contributor.authorSantos, Pedro M
dc.contributor.authorStephenson, Anne
dc.contributor.authorTaylor, Veronique
dc.contributor.authorTurton, Jane F
dc.contributor.authorWaglechner, Nicholas
dc.contributor.authorWilliams, Paul
dc.contributor.authorThrane, Sandra W
dc.contributor.authorWright, Gerard D
dc.contributor.authorBrinkman, Fiona SL
dc.contributor.authorTucker, Nicholas P
dc.contributor.authorTuemmler, Buerkhard
dc.contributor.authorWinstanley, Craig
dc.contributor.authorLevesque, Roger C
dc.date.accessioned2017-08-30T05:00:43Z
dc.date.available2017-08-30T05:00:43Z
dc.date.issued2015
dc.identifier.issn1664-302X
dc.identifier.doi10.3389/fmicb.2015.01036
dc.identifier.urihttp://hdl.handle.net/10072/101852
dc.description.abstractThe International Pseudomonas aeruginosa Consortium is sequencing over 1000 genomes and building an analysis pipeline for the study of Pseudomonas genome evolution, antibiotic resistance and virulence genes. Metadata, including genomic and phenotypic data for each isolate of the collection, are available through the International Pseudomonas Consortium Database (http://ipcd.ibis.ulaval.ca/). Here, we present our strategy and the results that emerged from the analysis of the first 389 genomes. With as yet unmatched resolution, our results confirm that P. aeruginosa strains can be divided into three major groups that are further divided into subgroups, some not previously reported in the literature. We also provide the first snapshot of P. aeruginosa strain diversity with respect to antibiotic resistance. Our approach will allow us to draw potential links between environmental strains and those implicated in human and animal infections, understand how patients become infected and how the infection evolves over time as well as identify prognostic markers for better evidence-based decisions on patient care.
dc.description.peerreviewedYes
dc.languageEnglish
dc.publisherFrontiers Research Foundation
dc.relation.ispartofpagefrom1036-1
dc.relation.ispartofpageto1036-8
dc.relation.ispartofjournalFrontiers in Microbiology
dc.relation.ispartofvolume6
dc.subject.fieldofresearchMicrobiology not elsewhere classified
dc.subject.fieldofresearchMicrobiology
dc.subject.fieldofresearchcode060599
dc.subject.fieldofresearchcode0605
dc.titleClinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
dc.typeJournal article
dc.type.descriptionC1 - Articles
dc.type.codeC - Journal Articles
dcterms.licensehttps://creativecommons.org/licenses/by/4.0/
dc.description.versionPublished
gro.rights.copyright© 2015 Freschi, Jeukens, Kukavica-Ibrulj, Boyle, Dupont, Laroche, Larose, Maaroufi, Fothergill, Moore, Winsor, Aaron, Barbeau, Bell, Burns, Camara, Cantin, Charette, Dewar, Déziel, Grimwood, Hancock, Harrison, Heeb, Jelsbak, Jia, Kenna, Kidd, Klockgether, Lam, Lamont, Lewenza, Loman, Malouin, Manos, McArthur, McKeown, Milot, Naghra, Nguyen, Pereira, Perron, Pirnay, Rainey, Rousseau, Santos, Stephenson, Taylor, Turton, Waglechner, Williams, Thrane, Wright, Brinkman, Tucker, Tümmler, Winstanley and Levesque. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
gro.hasfulltextFull Text
gro.griffith.authorGrimwood, Keith


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