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dc.contributor.authorChe, Rongxiao
dc.contributor.authorWang, Weijin
dc.contributor.authorZhang, Jing
dc.contributor.authorThi, Thu Nhan Nguyen
dc.contributor.authorTao, Juan
dc.contributor.authorWang, Fang
dc.contributor.authorWang, Yanfen
dc.contributor.authorXu, Zhihong
dc.contributor.authorCui, Xiaoyong
dc.date.accessioned2018-10-16T23:16:41Z
dc.date.available2018-10-16T23:16:41Z
dc.date.issued2016
dc.identifier.issn1439-0108
dc.identifier.doi10.1007/s11368-016-1563-6
dc.identifier.urihttp://hdl.handle.net/10072/143127
dc.description.abstractPurpose: Understanding soil heterotrophic respiration in relation to microbial properties is not only fundamental to soil respiration modelling, prediction, and regulation through management, but also essential to interpreting microbial community dynamics from an ecologically meaningful perspective. This paper reviewed the recent advances in knowledge and proposed future directions for exploring the respiration-microbe relationships by means of rDNA- or rRNA-based indices (i.e. rDNA copies, rRNA copies, and rDNA- or rRNA-based community structures). Materials and methods: We first elucidated the theoretical basis for using rDNA- or rRNA-based indices to probe into soil microbial respiration. Then, the published studies that simultaneously measured soil microbial respiration and the rDNA- or rRNA-based indices were synthesized, extracted, and analysed to further explore the respiration-microbe relationships. At last, the uncertainties and perspectives for establishing the respiration-microbe links were proposed and discussed. Results and discussion: The rDNA- or rRNA-based indices are theoretically promising for pinpointing the relationships between soil heterotrophic respiration and microbial properties. Our systematic review suggested that the correlations between bacterial rDNA copies and microbial respiration are inconsistent across studies, while the fungal and archaeal rDNA (or ITS) copies showed moderately positive and negative correlations with soil microbial respiration, respectively. Bacterial 16S rDNA-based community structures were significantly correlated with soil microbial respiration in some studies, but not in some short-term situations. Although rRNA copies are widely used as the proxies of microbial activity, no significant correlations between rRNA copies and soil microbial respiration have been found in previous studies. Bacterial 16S rRNA-based community structures were correlated well with the short-term responses of soil microbial respiration to rewetting or labile carbon amendments and clearly outperformed other rDNA- or rRNA-based indices. As respiration-microbe relationships can be affected by many factors, such as soil physicochemical properties and even the analysis methods of microbial indices, the 69 previous studies included in this review actually provided limited information on them, and the aforementioned results still need to be further confirmed in future studies. Conclusions and perspectives: Overall, the relationships between soil microbial respiration and rDNA- or rRNA-based indices are still far from being well established. Future research should be directed to systematically understanding the respiration-microbe links, with more attention to the fungus-, archaea- and RNA-related molecular indices. The relationships between microbial specific lineages and total respiration rates should be explored in future studies, and the effects of edaphic properties on the respiration-microbe relationships should also be evaluated.
dc.description.peerreviewedYes
dc.languageEnglish
dc.language.isoeng
dc.publisherSpringer
dc.relation.ispartofpagefrom2698
dc.relation.ispartofpageto2708
dc.relation.ispartofissue12
dc.relation.ispartofjournalJournal of Soils and Sediments
dc.relation.ispartofvolume16
dc.subject.fieldofresearchEarth sciences
dc.subject.fieldofresearchEnvironmental sciences
dc.subject.fieldofresearchSoil biology
dc.subject.fieldofresearchCommunity ecology (excl. invasive species ecology)
dc.subject.fieldofresearchAgricultural, veterinary and food sciences
dc.subject.fieldofresearchcode37
dc.subject.fieldofresearchcode41
dc.subject.fieldofresearchcode410603
dc.subject.fieldofresearchcode310302
dc.subject.fieldofresearchcode30
dc.titleAssessing soil microbial respiration capacity using rDNA- or rRNA-based indices: a review
dc.typeJournal article
dc.type.descriptionC1 - Articles
dc.type.codeC - Journal Articles
gro.facultyGriffith Sciences, Environmental Futures Research Institute
gro.hasfulltextNo Full Text
gro.griffith.authorXu, Zhihong


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