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  • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

    Author(s)
    Okazaki, Y.
    Furuno, M.
    Kasukawa, T.
    Adachi, J.
    Bona, H.
    Kondo, S.
    Nikaido, I.
    Osato, N.
    Willming, L.
    Saito, R.
    Suzuki, H.
    Yamanaka, I
    Kiyosawa, H.
    Yagi, K.
    Tomaru, Y.
    Hasegawa, H.
    Nogami, A.
    Schonbach, C.
    Gojobori, T.
    Baldarelli, R.
    Hill, D.
    Bult, C.
    Hume, D. A.
    Quackenbush, J.
    Schrimi, L.
    Kanapin, A.
    Matsuda, H.
    Batalov, S.
    Beisel, K.
    Blake, J.
    Bradt, D.
    Brusic, V.
    Chothia, C.
    Corbani, L.
    Cousins, S.
    Dalla, E.
    Dragani, T.
    Fletcher, C.
    Forrest, A.
    Frazer, K.
    Gaasterland, T.
    Gariboldi, M.
    Gissi, C.
    Godzik, A.
    Gough, J.
    Grimmond, S.
    Gustincich, S.
    Hirokawa, N.
    Jackson, I.
    Jarvis, E.
    Kanai, A.
    Kawaji, H.
    Kawasawa, Y.
    Kedierski, R.
    King, B.
    Konagaya, A.
    Kurochkin, I.
    Lee, Y.
    Lenhard, B.
    Lyons, P.
    Maglott, D.
    Maltais, L.
    Marchionni, L.
    McKenzie, L.
    Miki, H.
    Nagashima, T.
    Nagashima, K.
    Numata, K.
    Okido, T.
    Pavan, W.
    Pertea, G.
    Pesole, G.
    Petrovsky, N.
    Pillai, R.
    Pontius, J.
    Qi, D.
    Ramachandran, S.
    Ravasi, T.
    Reed, J.
    Reed, D.
    Reid, J.
    Ring, B.
    Ringwald, M.
    Sandelin, A.
    Schneider, C.
    M Semple, C.
    Setou, M.
    Shimada, K.
    Sultana, R.
    Wells, C.
    Takenaka, Y.
    Taylor, M.
    Teasdale, R.
    Tomita, M.
    Verardo, R.
    Wagner, L.
    Wahlestedt, C.
    Wang, Y.
    Watanabe, Y.
    Griffith University Author(s)
    Wells, Christine
    Year published
    2002
    Metadata
    Show full item record
    Abstract
    Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the manual annotation of 60,770 full-length mouse complementary DNA sequences. These are clustered into 33,409 'transcriptional units', contributing 90.1% of a newly established mouse transcriptome database. Of these transcriptional units, 4,258 are new protein-coding and 11,665 are new non-coding messages, indicating that non-coding ...
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    Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the manual annotation of 60,770 full-length mouse complementary DNA sequences. These are clustered into 33,409 'transcriptional units', contributing 90.1% of a newly established mouse transcriptome database. Of these transcriptional units, 4,258 are new protein-coding and 11,665 are new non-coding messages, indicating that non-coding RNA is a major component of the transcriptome. 41% of all transcriptional units showed evidence of alternative splicing. In protein-coding transcripts, 79% of splice variations altered the protein product. Whole-transcriptome analyses resulted in the identification of 2,431 sense-antisense pairs. The present work, completely supported by physical clones, provides the most comprehensive survey of a mammalian transcriptome so far, and is a valuable resource for functional genomics
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    Journal Title
    Nature
    Volume
    420
    Issue
    6915
    Publisher URI
    http://www.nature.com/nature/index.html
    DOI
    https://doi.org/10.1038/nature01266
    Publication URI
    http://hdl.handle.net/10072/16750
    Collection
    • Journal articles

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