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  • GlyGen data model and processing workflow

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    Campbell421841-Published.pdf (342.4Kb)
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    Version of Record (VoR)
    Author(s)
    Kahsay, Robel
    Vora, Jeet
    Navelkar, Rahi
    Mousavi, Reza
    Fochtman, Brian C
    Holmes, Xavier
    Pattabiraman, Nagarajan
    Ranzinger, Rene
    Mahadik, Rupali
    Williamson, Tatiana
    Kulkarni, Sujeet
    Agarwal, Gaurav
    Martin, Maria
    Campbell, Matthew P
    et al.
    Griffith University Author(s)
    Campbell, Matthew
    Year published
    2020
    Metadata
    Show full item record
    Abstract
    Glycoinformatics plays a major role in glycobiology research, and the development of a comprehensive glycoinformatics knowledgebase is critical. This application note describes the GlyGen data model, processing workflow and the data access interfaces featuring programmatic use case example queries based on specific biological questions. The GlyGen project is a data integration, harmonization and dissemination project for carbohydrate and glycoconjugate-related data retrieved from multiple international data sources including UniProtKB, GlyTouCan, UniCarbKB and other key resources.Glycoinformatics plays a major role in glycobiology research, and the development of a comprehensive glycoinformatics knowledgebase is critical. This application note describes the GlyGen data model, processing workflow and the data access interfaces featuring programmatic use case example queries based on specific biological questions. The GlyGen project is a data integration, harmonization and dissemination project for carbohydrate and glycoconjugate-related data retrieved from multiple international data sources including UniProtKB, GlyTouCan, UniCarbKB and other key resources.
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    Journal Title
    Bioinformatics
    Volume
    36
    Issue
    12
    DOI
    https://doi.org/10.1093/bioinformatics/btaa238
    Copyright Statement
    © The Author(s) 2020. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
    Subject
    Mathematical sciences
    Biological sciences
    Science & Technology
    Life Sciences & Biomedicine
    Physical Sciences
    Biochemical Research Methods
    Publication URI
    http://hdl.handle.net/10072/397207
    Collection
    • Journal articles

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