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  • The Transcriptional Landscape of the Mammalian Genome

    Author(s)
    Carninci, P.
    Mattick, J.
    Hume, D.
    Wahlestedt, C.
    Suzuki, H.
    Liu, E.
    Ravasi, T.
    Wells, Christine
    Lenhard, B.
    Frith, M.
    Gough, J.
    Bajic, V.
    Bult, C.
    Quackenbush, J.
    Hayashizaki, Y.
    Kasukawa, T.
    Katayama, S.
    Maeda, N.
    Kodzius, R.
    Shimokawa, K.
    Brenner, S.
    Batalov, S.
    Forrest, A. R.
    Zavolan, M.
    et al.
    Griffith University Author(s)
    Wells, Christine
    Year published
    2005
    Metadata
    Show full item record
    Abstract
    This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. We identify the 5' and 3' boundaries of 181,047 transcripts with extensive variation in transcripts arising from alternative promoter usage, splicing, and polyadenylation. There are 16,247 new mouse protein-coding transcripts, including 5154 encoding previously unidentified proteins. Genomic mapping of the transcriptome reveals transcriptional forests, with overlapping transcription on both strands, separated by deserts in which few ...
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    This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. We identify the 5' and 3' boundaries of 181,047 transcripts with extensive variation in transcripts arising from alternative promoter usage, splicing, and polyadenylation. There are 16,247 new mouse protein-coding transcripts, including 5154 encoding previously unidentified proteins. Genomic mapping of the transcriptome reveals transcriptional forests, with overlapping transcription on both strands, separated by deserts in which few transcripts are observed. The data provide a comprehensive platform for the comparative analysis of mammalian transcriptional regulation in differentiation and development.
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    Journal Title
    Science
    Volume
    309
    Publisher URI
    http://sciencemag.org/
    DOI
    https://doi.org/10.1126/science.1112014
    Copyright Statement
    © 2005 AAAS. Self-archiving of the author-manuscript version in an institutional repository is not yet supported by this publisher. Use hypertext link above to access the journal website.
    Publication URI
    http://hdl.handle.net/10072/4986
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    • Journal articles

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