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dc.contributor.authorA. Wells, Christine
dc.contributor.authorMosbergen, Rowland
dc.contributor.authorKorn, Othmar
dc.contributor.authorChoi, Jarny
dc.contributor.authorSeidenman, Nick
dc.contributor.authorMatigian, Nicholas
dc.contributor.authorM. Vitale, Alejandra
dc.contributor.authorShepherd, Jill
dc.date.accessioned2017-05-03T13:09:17Z
dc.date.available2017-05-03T13:09:17Z
dc.date.issued2013
dc.date.modified2014-01-08T05:19:08Z
dc.identifier.issn18735061
dc.identifier.doi10.1016/j.scr.2012.12.003
dc.identifier.urihttp://hdl.handle.net/10072/55373
dc.description.abstractGenome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org.
dc.description.peerreviewedYes
dc.description.publicationstatusYes
dc.languageEnglish
dc.language.isoeng
dc.publisherElsevier
dc.publisher.placeNetherlands
dc.relation.ispartofstudentpublicationN
dc.relation.ispartofpagefrom387
dc.relation.ispartofpageto395
dc.relation.ispartofissue3
dc.relation.ispartofjournalStem Cell Research
dc.relation.ispartofvolume10
dc.rights.retentionY
dc.subject.fieldofresearchNeurosciences not elsewhere classified
dc.subject.fieldofresearchBiological Sciences
dc.subject.fieldofresearchMedical and Health Sciences
dc.subject.fieldofresearchcode110999
dc.subject.fieldofresearchcode06
dc.subject.fieldofresearchcode11
dc.titleStemformatics: Visualisation and sharing of stem cell gene expression
dc.typeJournal article
dc.type.descriptionC1 - Articles
dc.type.codeC - Journal Articles
gro.date.issued2013
gro.hasfulltextNo Full Text
gro.griffith.authorMatigian, Nicholas
gro.griffith.authorKorn, Othmar C.


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