Comparative genomics reveals insights into avian genome evolution and adaptation
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Author(s)
Li, Cai
Li, Qiye
Li, Bo
Larkin, Denis M
Lee, Chul
Storz, Jay F
Antunes, Agostinho
Greenwold, Matthew J
Meredith, Robert W
Odeen, Anders
Cui, Jie
Zhou, Qi
Xu, Luohao
Pan, Hailin
Wang, Zongji
Jin, Lijun
Zhang, Pei
Hu, Haofu
Yang, Wei
Hu, Jiang
Xiao, Jin
Yang, Zhikai
Liu, Yang
Xie, Qiaolin
Yu, Hao
Lian, Jinmin
Wen, Ping
Zhang, Fang
Li, Hui
Zeng, Yongli
Xiong, Zijun
Liu, Shiping
Zhou, Long
Huang, Zhiyong
An, Na
Wang, Jie
Zheng, Qiumei
Xiong, Yingqi
Wang, Guangbiao
Wang, Bo
Wang, Jingjing
Fan, Yu
da Fonseca, Rute R
Alfaro-Nunez, Alonzo
Schubert, Mikkel
Orlando, Ludovic
Mourier, Tobias
Howard, Jason T
Ganapathy, Ganeshkumar
Pfenning, Andreas
Whitney, Osceola
Rivas, Miriam V
Hara, Erina
Smith, Julia
Farre, Marta
Narayan, Jitendra
Slavov, Gancho
Romanov, Michael N
Borges, Rui
Machado, Joao Paulo
Khan, Imran
Springer, Mark S
Gatesy, John
Hoffmann, Federico G
Opazo, Juan C
Hastad, Olle
Sawyer, Roger H
Kim, Heebal
Kim, Kyu-Won
Kim, Hyeon Jeong
Cho, Seoae
Li, Ning
Huang, Yinhua
Bruford, Michael W
Zhan, Xiangjiang
Dixon, Andrew
Bertelsen, Mads F
Derryberry, Elizabeth
Warren, Wesley
Wilson, Richard K
Li, Shengbin
Ray, David A
Green, Richard E
O'Brien, Stephen J
Griffin, Darren
Johnson, Warren E
Haussler, David
Ryder, Oliver A
Willerslev, Eske
Graves, Gary R
Alstroem, Per
Fjeldsa, Jon
Mindell, David P
Edwards, Scott V
Braun, Edward L
Rahbek, Carsten
Burt, David W
Houde, Peter
Zhang, Yong
Yang, Huanming
Wang, Jian
Jarvis, Erich D
Gilbert, M Thomas P
Wang, Jun
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Abstract
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
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346
Issue
6215
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Genetics not elsewhere classified