Reliable Detection of Short Periodic Gene Expression Time Series Profiles in DNA Microarray Data
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Yan, Hong
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WA Gruver, LO Hall, D Yeung, M Smith
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San Antonio, TX
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Abstract
Many cellular processes exhibit cyclic behaviors. Hence, one important task in gene expression data analysis is to detect subset of genes that exhibit periodicity in their gene expression time series profiles. Unfortunately, gene expression time series profiles are usually of very short length, with very few periods, unevenly sampled, and are highly contaminated with noise. This makes detection of periodic profiles a very challenging problem. In this paper, we present several effective computational techniques developed recently in our research group for the reliable detection of short periodic gene expression time series profiles.
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2009 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN AND CYBERNETICS (SMC 2009), VOLS 1-9
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© 2009 IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE.
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Gene expression (incl. microarray and other genome-wide approaches)