The FANTOM web resource: From mammalian transcriptional landscape to its dynamic regulation
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Author(s)
Severin, Jessica
Lizio, Marina
Waterhouse, Andrew
Katayama, Shintaro
Irvine, Katharine
Hume, David
Forrest, Alistair
Suzuki, Harukazu
Carninci, Piero
Hayashizaki, Yoshihide
Daub, Carsten
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Abstract
In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.
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Genome Biology
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10
Issue
4
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© 2009 Forrest et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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Environmental sciences
Biological sciences
Genetics not elsewhere classified
Information and computing sciences