CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
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Bouhraoua, Adel
Mehdiabadi, Mahta
Clementel, Damiano
Monzon, Alexander Miguel
CAID predictors
Tosatto, Silvio C E
Piovesan, Damiano
Sharma, Alok
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Abstract
Intrinsic disorder (ID) in proteins is well-established in structural biology, with increasing evidence for its involvement in essential biological processes. As measuring dynamic ID behavior experimentally on a large scale remains difficult, scores of published ID predictors have tried to fill this gap. Unfortunately, their heterogeneity makes it difficult to compare performance, confounding biologists wanting to make an informed choice. To address this issue, the Critical Assessment of protein Intrinsic Disorder (CAID) benchmarks predictors for ID and binding regions as a community blind-test in a standardized computing environment. Here we present the CAID Prediction Portal, a web server executing all CAID methods on user-defined sequences. The server generates standardized output and facilitates comparison between methods, producing a consensus prediction highlighting high-confidence ID regions. The website contains extensive documentation explaining the meaning of different CAID statistics and providing a brief description of all methods. Predictor output is visualized in an interactive feature viewer and made available for download in a single table, with the option to recover previous sessions via a private dashboard. The CAID Prediction Portal is a valuable resource for researchers interested in studying ID in proteins. The server is available at the URL: https://caid.idpcentral.org.
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Nucleic Acids Research
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51
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W1
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© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
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Biochemistry and cell biology
Biological sciences
Chemical sciences
Environmental sciences
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
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Del Conte, A; Bouhraoua, A; Mehdiabadi, M; Clementel, D; Monzon, AM; CAID Predictors; Tosatto, SCE; Piovesan, D; Sharma, A, CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins, Nucleic Acids Research, 2023, 51 (W1), pp. W62-W69