Comprehensive assessment of actionable genomic alterations in primary colorectal carcinoma using targeted next-generation sequencing

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Jan, Yi-Hua
Tan, Kien Thiam
Chen, Shu-Jen
Yip, Timothy Tak Chun
Lu, Cu Tai
Lam, Alfred King-Yin
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2022
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Abstract

Background: The clinical utility of comprehensive genomic profiling (CGP) for guiding treatment has gradually become the standard-of-care procedure for colorectal carcinoma (CRC). Here, we comprehensively assess emerging targeted therapy biomarkers using CGP in primary CRC. Methods: A total of 575 primary CRCs were sequenced by ACTOnco® assay for genomic alterations, tumour mutational burden (TMB), and microsatellite instability (MSI). Results: Eighteen percent of patients were detected as MSI-High (MSI-H), and the remaining cases were classified as microsatellite stable (MSS). Driver mutation prevalence in MSS CRCs were APC (74%), TP53 (67%), KRAS (47%), PIK3CA (21%) and BRAF (13%). The median TMBs for MSI-H and MSS patients were 37.8 mutations per mega base (mut/Mb) and 3.9 mut/Mb, respectively. Forty-seven percent of MSI-H CRC harboured at least one loss-of-function mutations in genes that may hamper immune checkpoint blockade. Among MSS RAS/RAF wild-type CRCs, 59% had at least one actionable mutation that may compromise the efficacy of anti-EGFR therapy. For late-stage CRC, 51% of patients are eligible for standard care actionability and the remaining 49% could be enrolled in clinical trials with investigational drugs. Conclusions: This study highlights the essential role of CGP for identifying rational targeted therapy options in CRC.

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British Journal of Cancer

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© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

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Oncology and carcinogenesis

Science & Technology

Life Sciences & Biomedicine

Oncology

CANCER

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Jan, Y-H; Tan, KT; Chen, S-J; Yip, TTC; Lu, CT; Lam, AK-Y, Comprehensive assessment of actionable genomic alterations in primary colorectal carcinoma using targeted next-generation sequencing, British Journal of Cancer, 2022

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