Annotated Video Footage for Automated Identification and Counting of Fish in Unconstrained Seagrass Habitats

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Ditria, Ellen M
Connolly, Rod M
Jinks, Eric L
Lopez-Marcano, Sebastian
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2021
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Abstract

Technological advances are improving the collection, processing and analysis of ecological data. One of these technologies that has been adopted in recent studies by ecologists is computer vision (CV). CV is a rapidly developing area of machine learning that aims to infer image content at the same level humans can by extracting information from pixels (LeCun et al., 2015; Weinstein, 2018). CV in ecology has gained much attention as it can quickly and accurately process image from remote video imagery while allowing scientists to monitor both individuals and populations at unprecedented spatial and temporal scales. Automated analysis of imagery through CV has also become more accurate and streamlined with the implementation of deep learning (a subset of machine learning) models that have improved the capacity to processes raw images compared to traditional machine learning methods (LeCun et al., 2015; Villon et al., 2016). As the use of camera systems for monitoring fish abundances is common practice in conservation ecology (Gilby et al., 2017; Whitmarsh et al., 2017; Langlois et al., 2020), deep learning allows for the automated processing of big data from video or images, a step which usually creates a bottleneck when these data must be analyzed manually.

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Frontiers in Marine Science

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8

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© 2021 Ditria, Connolly, Jinks and Lopez-Marcano. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Oceanography

Ecology

Geology

Science & Technology

Life Sciences & Biomedicine

Environmental Sciences

Marine & Freshwater Biology

Environmental Sciences & Ecology

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Ditria, EM; Connolly, RM; Jinks, EL; Lopez-Marcano, S, Annotated Video Footage for Automated Identification and Counting of Fish in Unconstrained Seagrass Habitats, Frontiers in Marine Science, 2021, 8, pp. 629485

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