Metal–DNA interactions: Exploring the impact of metal ions on key stages of forensic DNA analysis

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Bonsu, Dan Nana Osei
Higgins, Denice
Simon, Claire
Henry, Julianne M
Austin, Jeremy J
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2023
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Abstract

Forensic DNA analysis continues to be hampered by the complex interactions between metals and DNA. Metal ions may cause direct DNA damage, inhibit DNA extraction and polymerase chain reaction (PCR) amplification or both. This study evaluated the impact of metal ions on DNA extraction, quantitation, and short tandem repeat profiling using cell‐free and cellular (saliva) DNA. Of the 11 metals assessed, brass exhibited the strongest PCR inhibitory effects, for both custom and Quantifiler Trio quantitation assays. Metal ion inhibition varied across the two quantitative PCR assays and the amount of DNA template used. The Quantifiler Trio internal PCR control (IPC) only revealed evidence of PCR inhibition at higher metal ion concentrations, limiting the applicability of IPC as an indicator of the presence of metal inhibitor in a sample. Notably, ferrous ions were found to significantly decrease the extraction efficiency of the DNA‐IQ DNA extraction system. The amount of DNA degradation and inhibition in saliva samples caused by metal ions increased with a dilution of the sample, suggesting that the saliva matrix provides protection from metal ion effects.</jats:p>

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Electrophoresis

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© 2023 The Authors. Electrophoresis published byWiley-VCH GmbH. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.

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This publication has been entered in Griffith Research Online as an advanced online version.

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Biochemistry and cell biology

Analytical chemistry

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Bonsu, DNO; Higgins, D; Simon, C; Henry, JM; Austin, JJ, Metal–DNA interactions: Exploring the impact of metal ions on key stages of forensic DNA analysis, Electrophoresis, 2023

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