Impact of Single Amino Acid Substitution Upon Protein Structure
File version
Author(s)
Folkman, Lukas
Stantic, Bela
Griffith University Author(s)
Primary Supervisor
Other Supervisors
Editor(s)
Pastor, O
Sinoquet, C
Plantier, G
Schultz, T
Fred, A
Gamboa, H
Date
Size
719062 bytes
File type(s)
application/pdf
Location
Angers, FRANCE
License
Abstract
In the biological sciences, one of the most fundamental operations is that of comparison. As we strive to further understand the constituent parts of living tissue, we need to examine proteins and their many mutations. Indeed, characterising mutations is an important part of proteomics, because a seemingly trivial mutation can sometimes stand between creating a life-saving drug on one hand, or blocking a vital receptor inactivating that same drug on the other. In this work we examined single point mutations to characterise their effects on outwardly expanding neighbourhood ranges. As the shape of a protein is very important, we examined how mutations can make subtle changes to the protein shape as well as investigated the implications both for backbone and side-chain residues. Our findings suggest that structural changes upon a mutation are significantly influenced by the protein shape, which allows for the prediction of the impact brought about the mutation by looking only into the protein shape. Surprisingly, we found that there was very little variation between wild type and mutant protein structures close to the mutation site. Also, in contrast with what was expected, the largest structural variations were found when deleted and introduced residues had similar hydrophobicity.
Journal Title
Conference Title
BIOINFORMATICS 2014: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS
Book Title
Edition
Volume
Issue
Thesis Type
Degree Program
School
Publisher link
DOI
Patent number
Funder(s)
Grant identifier(s)
Rights Statement
Rights Statement
© 2014 ScitePress. The attached file is reproduced here in accordance with the copyright policy of the publisher. Please refer to the conference's website for access to the definitive, published version.
Item Access Status
Note
Access the data
Related item(s)
Subject
Data structures and algorithms