Comparative modelling and virtual screening of atypical (RIO) protein kinases from Haemonchus contortus - promise as new targets for nematocidal drugs
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Wang, Conan
Taylor, Paul
Campbell, BE
Boag, P.
Cantacessi, C
Hu, M.
Sindhu, Z.
Loukas, A.
Sternberg, PW
Gasser, RB
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Lorne, Australia
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Abstract
Almost nothing is known about atypical kinases in multicellular organisms, including parasites. We have analysed three RIO kinase genes, riok-1, riok-2 and riok-3, and their products from Haemonchus contortus, one of the most important parasitic nematodes of small ruminants. Based on comparative modelling using the known structures of RIOK-1 and RIOK-2 from Archaeoglobus fulgidus [1,2], the structural comparison of the three RIOKs shows that the RIOK domain harbouring the catalytic site is a wellconserved fold among parasitic nematodes, in particular between H. contortus and T. vitrinus. In a first attempt to probe the active site of RIOKs, with a view toward drug discovery, we conducted an in silico screen with the program LIDAEUS using the homology model of Hc-RIOK-1 and employing the SPECS database. Our findings indicate opportunities for the design of a novel class of nematodespecific inhibitors of RIO kinases. The latter aspect is of paramount importance, given the serious problems linked to anthelmintic resistance in parasitic nematode populations of livestock.
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36th Lorne Conference on Protein Structure and Function 2011. Proceedings
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Structural Biology (incl. Macromolecular Modelling)