Deep learning data augmentation for Raman spectroscopy cancer tissue classification

Loading...
Thumbnail Image
File version

Version of Record (VoR)

Author(s)
Wu, Man
Wang, Shuwen
Pan, Shirui
Terentis, Andrew C
Strasswimmer, John
Zhu, Xingquan
Griffith University Author(s)
Primary Supervisor
Other Supervisors
Editor(s)
Date
2021
Size
File type(s)
Location
Abstract

Recently, Raman Spectroscopy (RS) was demonstrated to be a non-destructive way of cancer diagnosis, due to the uniqueness of RS measurements in revealing molecular biochemical changes between cancerous vs. normal tissues and cells. In order to design computational approaches for cancer detection, the quality and quantity of tissue samples for RS are important for accurate prediction. In reality, however, obtaining skin cancer samples is difficult and expensive due to privacy and other constraints. With a small number of samples, the training of the classifier is difficult, and often results in overfitting. Therefore, it is important to have more samples to better train classifiers for accurate cancer tissue classification. To overcome these limitations, this paper presents a novel generative adversarial network based skin cancer tissue classification framework. Specifically, we design a data augmentation module that employs a Generative Adversarial Network (GAN) to generate synthetic RS data resembling the training data classes. The original tissue samples and the generated data are concatenated to train classification modules. Experiments on real-world RS data demonstrate that (1) data augmentation can help improve skin cancer tissue classification accuracy, and (2) generative adversarial network can be used to generate reliable synthetic Raman spectroscopic data.

Journal Title

Scientific Reports

Conference Title
Book Title
Edition
Volume

11

Issue

1

Thesis Type
Degree Program
School
Publisher link
Patent number
Funder(s)
Grant identifier(s)
Rights Statement
Rights Statement

© The Author(s) 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made.

Item Access Status
Note
Access the data
Related item(s)
Subject

Oncology and carcinogenesis

Science & Technology

Multidisciplinary Sciences

Science & Technology - Other Topics

SKIN-CANCER

DIAGNOSIS

Persistent link to this record
Citation

Wu, M; Wang, S; Pan, S; Terentis, AC; Strasswimmer, J; Zhu, X, Deep learning data augmentation for Raman spectroscopy cancer tissue classification, Scientific Reports, 2021, 11 (1), pp. 23842

Collections