Fast and Accurate Accessible Surface Area Prediction Without a Sequence Profile
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Kouza, Maksim
Zhou, Yaoqi
Kloczkowski, Andrzej
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Zhou, Y
Kloczkowski, A
Faraggi, E
Yang, Y
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Abstract
A fast accessible surface area (ASA) predictor is presented. In this new approach no residue mutation profiles generated by multiple sequence alignments are used as inputs. Instead, we use only single sequence information and global features such as single-residue and two-residue compositions of the chain. The resulting predictor is both highly more efficient than sequence alignment based predictors and of comparable accuracy to them. Introduction of the global inputs significantly helps achieve this comparable accuracy. The predictor, termed ASAquick, is found to perform similarly well for so-called easy and hard cases indicating generalizability and possible usability for de-novo protein structure prediction.
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Prediction of Protein Secondary Structure
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© 2017 Springer. This is the author-manuscript version of this paper. It is reproduced here in accordance with the copyright policy of the publisher. Please refer to the publisher’s website for further information.
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Other chemical sciences
Biochemistry and cell biology
Biochemistry and cell biology not elsewhere classified