Intermittently open/closed estuaries (IOCE) are wave-dominated estuaries with entrances that temporarily close to the ocean. Wave–current interactions play a major role in estuary entrance morphodynamics and influence the degree of energy transfer from the ocean into the lagoon. This study utilizes artificial entrance openings of multiple ICOE in Victoria, Australia, to capture continuous hydrodynamic and geomorphic data throughout the opening cycle. We illustrate that water level oscillations in the infragravity (IG) band) are present in the basin during open entrance conditions. IG waves were observed to propagate up to 1.8 km upstream of the mouth while the entrance was open. Our work identifies that changes in cross-sectional area, bed depth at the berm position, and offshore wave height control the magnitude of IG waves within the estuary basin. IG wave magnitude is also tidally modulated and increases with high tides when the nearshore water level is higher. Late during the drainage phase, waves were observed to track the margins of the channel, away from the thalweg, and reach the basin. IG wave energy was highest immediately after the basin had ceased draining and while channel dimensions at the mouth were within 10% of their maximum value. As the entrance aggrades, IG wave magnitude decreases in the absence of energetic offshore wave conditions. We relate the changes in IG wave magnitude and frequency to a six-stage conceptual model of the opening–closure sequence. Within the basin, IG wave energy, height and frequency were also consistently highest closer to the mouth and decreased with distance upstream. Our findings indicate that water level oscillations in the IG band are a persistent feature in IOCE and may be the norm rather than the exception in these systems. As IG waves were captured serendipitously as part of a larger field campaign, future work will focus on instrumenting IOCE to gain high-resolution data to quantify IG wave processes during entrance openings. © 2020 John Wiley & Sons, Ltd.